Bart Haegeman

BART HAEGEMAN

Theoretical and Experimental Ecology Station
Centre National de la Recherche Scientifique
2 route du CNRS, 09200 Moulis, France
bart.haegeman[at]sete.cnrs.fr

RESEARCH INTERESTS

Mathematical modelling in ecology

PUBLICATIONS et al.

E. Bestion et al. (2021). Phytoplankton biodiversity is more important for ecosystem functioning in highly variable thermal environments. Proceedings of the National Academy of Sciences of the U.S.A. publ
A.D. Synodinos, B. Haegeman, A. Sentis, J.M. Montoya. (2021). Theory of temperature-dependent consumer-resource interactions. Ecology Letters 24, 1539-1555. pdf bioRxiv
D. Montoya, B. Haegeman, S. Gaba, C. de Mazancourt, M. Loreau. (2021). Habitat fragmentation and food security in crop pollination systems. Journal of Ecology 109, 2991-3006. pdf bioRxiv
G. Laudanno, B. Haegeman, D.L Rabosky, R.S. Etienne. (2021). Detecting lineage-specific shifts in diversification: A proper likelihood approach. Systematic Biology 70, 389-407. pdf code
F. Richter, B. Haegeman, R.S. Etienne, E.C. Wit. (2020). Introducing a general class of species diversification models for phylogenetic trees. Statistica Neerlandica 74, 262-271. pdf
G. Laudanno, B. Haegeman, R.S. Etienne. (2020). Analytical support for a new method to compute the likelihood of diversification models. Bulletin of Mathematical Biology 82, 22. pdf bioRxiv
A. Sentis, B. Haegeman, J.M. Montoya. (2020). Stoichiometric constraints modulate the effects of temperature and nutrients on biomass distribution and community stability. Recommended by Peer Community In Ecology. bioRxiv pci ecol
J.-F. Arnoldi, M. Loreau, B. Haegeman. (2019). The inherent multidimensionality of temporal variability: How common and rare species shape stability patterns. Ecology Letters 22, 1557-1567. Recommended by Peer Community In Ecology. pdf bioRxiv pci ecol
D. Montoya et al. (2019). Trade-offs in the provisioning and stability of ecosystem services in agroecosystems. Ecological Applications 29, e01853. pdf bioRxiv
S. Jacob et al. (2018). Habitat choice meets thermal specialization: Competition with specialists may drive suboptimal habitat preferences in generalists. Proceedings of the National Academy of Sciences of the U.S.A. 115, 11988-11993. pdf
R. Delsol, M. Loreau, B. Haegeman. (2018). The relationship between the spatial scaling of biodiversity and ecosystem stability. Global Ecology and Biogeography 27, 439-449. pdf bioRxiv
J.-F. Arnoldi, A. Bideault, M. Loreau, B. Haegeman. (2018). How ecosystems recover from pulse perturbations: A theory of short- to long-term responses. Journal of Theoretical Biology 436, 79-92. pdf bioRxiv
B. Haegeman, R.S. Etienne. (2017). A general sampling formula for community structure data. Methods in Ecology and Evolution 8, 1506-1519. publ code
B. Haegeman et al. (2016). Resilience, invariability, and ecological stability across levels of organization. bioRxiv 085852. bioRxiv
J.-F. Arnoldi, B. Haegeman. (2016). Unifying dynamical and structural stability of equilibria. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences 472, 20150874. pdf arXiv
J.-F. Arnoldi, M. Loreau, B. Haegeman. (2016). Resilience, reactivity and variability: A mathematical comparison of ecological stability measures. Journal of Theoretical Biology 389, 47-59. pdf arXiv
S. Wang, B. Haegeman, M. Loreau. (2015). Dispersal and metapopulation stability. PeerJ 3, e1295. publ
G. Huth, B. Haegeman, E. Pitard, F. Munoz. (2015). Long-distance rescue and slow extinction dynamics govern multiscale metapopulations. The American Naturalist 186, 460-469. pdf
T. Janzen, B. Haegeman, R.S. Etienne. (2015). A sampling formula for ecological communities with multiple dispersal syndromes. Journal of Theoretical Biology 374, 94-106. pdf
B. Haegeman, M. Loreau. (2015). A graphical-mechanistic approach to spatial resource competition. The American Naturalist 185, E1-E13. pdf
B. Haegeman, B. Sen, J.-J. Godon, J. Hamelin. (2014). Only Simpson diversity can be estimated accurately from microbial community fingerprints. Microbial Ecology 68, 169-172. pdf
B. Haegeman, T. Sari, R.S. Etienne. (2014). Predicting coexistence of plants subject to a tolerance-competition trade-off. Journal of Mathematical Biology 68, 1815-1847. pdf arXiv
B. Haegeman, M. Loreau. (2014). General relationships between consumer dispersal, resource dispersal and metacommunity diversity. Ecology Letters 17, 175-184. pdf arXiv f1000
B. Haegeman et al. (2013). Robust estimation of microbial diversity in theory and in practice. ISME Journal 7, 1092-1101. pdf arXiv
C. de Mazancourt et al. (2013). Predicting ecosystem stability from community composition and biodiversity. Ecology Letters 16, 617-625. pdf
R.S. Etienne, B. Haegeman. (2012). A conceptual and statistical framework for adaptive radiations with a key role for diversity-dependence. The American Naturalist 180, E75-E89. pdf code f1000
B. Haegeman, J.S. Weitz. (2012). A neutral theory of genome evolution and the frequency distribution of genes. BMC Genomics 13, 196. publ
R.S. Etienne et al. (2012). Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record. Proceedings of the Royal Society B: Biological Sciences 279, 1300-1309. pdf code
B. Haegeman, R.S. Etienne. (2011). Independent species in independent niches behave neutrally. Oikos 120, 961-963. pdf
A.O. Kislyuk, B. Haegeman, N.H. Bergman, J.S. Weitz. (2011). Genomic fluidity: An integrative view of gene diversity within microbial populations. BMC Genomics 12, 32. publ code
B. Haegeman, M. Loreau. (2011). A mathematical synthesis of niche and neutral theories in community ecology. Journal of Theoretical Biology 269, 150-165. pdf
R.S. Etienne, B. Haegeman. (2011). The neutral theory of biodiversity with random fission speciation. Theoretical Ecology 4, 87-109. pdf
B. Haegeman, R.S. Etienne. (2010). Self-consistent approach for neutral community models with speciation. Physical Review E 81, 031911. pdf
D. Vanpeteghem, B. Haegeman. (2010). An analytical approach to spatio-temporal dynamics of neutral community models. Journal of Mathematical Biology 61, 323-357. pdf
B. Haegeman, R.S. Etienne. (2010). Entropy maximization and the spatial distribution of species. The American Naturalist 175, E74-E90. pdf f1000
B. Haegeman, M. Loreau. (2009). Trivial and non-trivial applications of entropy maximization in ecology: A reply to Shipley. Oikos 118, 1270-1278. pdf
B. Haegeman, R.S. Etienne. (2009). Neutral models with generalised speciation. Bulletin of Mathematical Biology 71, 1507-1519. pdf
B. Haegeman, J. Hamelin, J.-J. Godon, J. Harmand, P. Loisel. A method for measuring the biological diversity of a sample. Patent EP 2203744 (B1), WO 2009/053393 (A1).
B. Haegeman, M. Loreau. (2008). Limitations of entropy maximization in ecology. Oikos 117, 1700-1710. pdf f1000
B. Haegeman, R.S. Etienne. (2008). Relaxing the zero-sum assumption in neutral biodiversity theory. Journal of Theoretical Biology 252, 288-294. pdf
D. Vanpeteghem, O. Zemb, B. Haegeman. (2008). Dynamics of neutral biodiversity. Mathematical Biosciences 212, 88-98. pdf f1000
B. Haegeman, A. Rapaport. (2008). How flocculation can explain coexistence in the chemostat. Journal of Biological Dynamics 2, 1-13.
B. Haegeman, D. Vanpeteghem, J.-J. Godon, J. Hamelin. (2008). DNA reassociation kinetics and diversity indices: Richness is not rich enough. Oikos 117, 177-181. pdf
O. Zemb, B. Haegeman, J.-P. Delgenès, P. Lebaron, J.-J. Godon. (2007). SAFUM: Statistical analysis of SSCP fingerprints using PCA projections, dendrograms and diversity estimators. Molecular Ecology Notes 7, 767-770. pdf code
T. Dhaene, D. Deschrijver, B. Haegeman. Broadband transfer function synthesis using orthonormal rational bases. Patent GB 2437351 (A), US 8145453 (B2).
D. Deschrijver, B. Haegeman, T. Dhaene. (2007). Orthonormal Vector Fitting: A robust macromodeling tool for rational approximation of frequency domain responses. IEEE Transactions on Advanced Packaging 30, 216-225. pdf
B. Haegeman, C. Lobry, J. Harmand. (2007). Modeling bacteria flocculation as density-dependent growth. AIChE Journal 53, 535-539. pdf
B. Haegeman, C. Lobry, J. Harmand. (2006). An effective model for flocculating bacteria with density-dependent growth dynamics. arXiv q-bio/0610042. arXiv
M. Fannes, B. Haegeman, D. Vanpeteghem. (2005). Robustness of dynamical entropy. Journal of Physics A: Mathematical and General 38, 2103-2113. arXiv
B. Haegeman. (2004). Local aspects of quantum entropy. PhD thesis, Katholieke Universiteit Leuven.
M. Fannes, B. Haegeman, M. Mosonyi, D. Vanpeteghem. (2004). Additivity of minimal entropy output for a class of covariant channels. arXiv quant-ph/0410195. arXiv
M. Fannes, B. Haegeman, M. Mosonyi. (2003). Entropy growth of shift-invariant states on a quantum spin chain. Journal of Mathematical Physics 44, 6005-6019. arXiv
R. Alicki, M. Fannes, B. Haegeman, D. Vanpeteghem. (2003). Coherent transport and dynamical entropy for Fermionic systems. Journal of Statistical Physics 113, 549-574. arXiv
M. Fannes, B. Haegeman. (2003). Quantum dynamical entropies for classical stochastic systems. Reports on Mathematical Physics 52, 151-165. arXiv
B. Haegeman, K. Engelborghs, D. Roose, D. Pieroux, T. Erneux. (2002). Stability and rupture of bifurcation bridges in semiconductor lasers subject to optical feedback. Physical Review E 66, 042616. pdf
D. Pieroux, T. Erneux, B. Haegeman, K. Engelborghs, D. Roose. (2001). Bridges of periodic solutions and tori in semiconductor lasers subject to delay. Physical Review Letters 87, 193901. pdf